Running Gavery NGS de novo for TS gene discovery (Swiss-pro)
node 2 still down, now avoiding - crashed again
Gavery NGS running on node 4
NCBI all Crassostrea running on node 3
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8am next day
Node 4- not running
Node 3- still running
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6am day 2 (092910)
node 3 still running
node 4 ended at 10797
ERROR for node 4
bigfish:~ safs$ mpiexec -np 2 -host localhost,node004 /common/clcbfxcell/blastall_cell_mpi -c cell_sw -v 1 -a 16 -b 1 -p blastx -m 8 -i /Volumes/bigfishRAID/Users/safs/Dropbox/Cluster/tmp/GaveryNGS163263contigs.fa -d /common/clcbfxcell/databases/swissprot.fasta > /Volumes/bigfishRAID/Users/safs/Dropbox/Cluster/tmp/GaveryNGS163263contigs_swiss.txt
[node004:48454] *** Process received signal ***
[node004:48454] Signal: Segmentation fault (11)
[node004:48454] Signal code: Address not mapped (1)
[node004:48454] Failing at address: 0x0
[node004:48454] [ 0] 2 libSystem.B.dylib 0x0000000083c663fa _sigtramp + 26
[node004:48454] [ 1] 3 blastall_cell_mpi 0x00000000006ab5e8 _ZTS24CFixClockSecureStoreFile + 567019
[node004:48454] [ 2] 4 blastall_cell_mpi 0x0000000000316313 _mh_execute_header + 3236627
[node004:48454] [ 3] 5 blastall_cell_mpi 0x000000000030d1ee _mh_execute_header + 3199470
[node004:48454] [ 4] 6 blastall_cell_mpi 0x000000000000ccad _mh_execute_header + 52397
[node004:48454] [ 5] 7 blastall_cell_mpi 0x000000000000e7f1 _mh_execute_header + 59377
[node004:48454] [ 6] 8 blastall_cell_mpi 0x000000000000ed0a _mh_execute_header + 60682
[node004:48454] [ 7] 9 blastall_cell_mpi 0x0000000000006c3b _mh_execute_header + 27707
[node004:48454] [ 8] 10 blastall_cell_mpi 0x0000000000008094 _mh_execute_header + 32916
[node004:48454] [ 9] 11 blastall_cell_mpi 0x00000000002918d2 _mh_execute_header + 2693330
[node004:48454] [10] 12 blastall_cell_mpi 0x0000000000001864 _mh_execute_header + 6244
[node004:48454] [11] 13 ??? 0x0000000000000011 0x0 + 17
[node004:48454] *** End of error message ***
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mpiexec noticed that process rank 1 with PID 48454 on node node004 exited on signal 11 (Segmentation fault).
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bigfish:~ safs$
____
restarted Gavery job on node 2